Additional file 1 of DNA methylation analysis identifies key transcription factors involved in mesenchymal stem cell osteogenic differentiation

  1. Gómez, Rodolfo 1
  2. Barter, Matt J. 2
  3. Alonso-Pérez, Ana 1
  4. Skelton, Andrew J. 2
  5. Proctor, Carole 2
  6. Herrero-Beaumont, Gabriel 3
  7. Young, David A. 2
  1. 1 Universidade de Santiago de Compostela
    info

    Universidade de Santiago de Compostela

    Santiago de Compostela, España

    ROR https://ror.org/030eybx10

  2. 2 Newcastle University
    info

    Newcastle University

    Newcastle-upon-Tyne, Reino Unido

    ROR https://ror.org/01kj2bm70

  3. 3 Universidad Autónoma de Madrid
    info

    Universidad Autónoma de Madrid

    Madrid, España

    ROR https://ror.org/01cby8j38

Mostrar afiliaciones +

Editor: figshare

Año de publicación: 2024

Tipo: Dataset

CC BY 4.0

DOI: 10.6084/M9.FIGSHARE.26573713.V1 lock_openAcceso abierto editor

Resumen

Additional file 1: REINS NCL 2020. Script, Regulatory Element Interrogation Script (REINS), available as an R Markdown document, to explore the relationship between the distribution of differentially methylated CpGs and TF-binding and thus activity during the differentiation process.

Referencias bibliográficas

  • 10.1002/art.38641
  • 10.1371/journal.pone.0155709
  • 10.1136/ard.2003.010223
  • 10.1038/ncprheum0070
  • 10.1016/s0094-5765(98)00144-1
  • 10.1016/j.bbrc.2015.12.035
  • 10.3899/jrheum.150325
  • 10.1023/a:1007301004855
  • 10.1007/s00198-011-1585-2
  • 10.1136/rmdopen-2015-000083
  • 10.1038/cdd.2015.168
  • 10.1517/14728220902915310
  • 10.1097/00003086-197110000-00021
  • 10.1016/j.tem.2010.08.006
  • 10.1038/nrm2066
  • 10.1177/1947601910393957
  • 10.1002/stem.2093
  • 10.1038/nm.2893
  • 10.2217/epi.12.21
  • 10.1093/nar/gkv007
  • 10.1186/1471-2105-11-587
  • 10.1038/nature11245
  • 10.1038/nature09906
  • 10.1101/032862v1
  • 10.1016/j.cell.2011.12.014
  • 10.1016/j.stem.2012.02.013
  • 10.1002/stem.2046
  • 10.4161/cc.8.13.8929
  • 10.1006/excr.1995.1154
  • 10.1002/stem.1573
  • 10.1101/gad.10.9.1096
  • 10.1007/s00109-008-0326-2
  • 10.1016/j.molmet.2015.02.002
  • 10.1016/j.molcel.2012.03.017
  • 10.1073/pnas.1000031107
  • 10.1093/emboj/cdg225
  • 10.1007/s00223-012-9623-4
  • 10.1002/jcb.21516
  • 10.1002/(sici)1097-4644(19991201)75:3<414::aid-jcb7>3.0.co;2-c
  • 10.1146/annurev-biochem-052110-115718
  • 10.1002/jcb.25568
  • 10.1038/ng.298
  • 10.1101/gr.136101.111
  • 10.1016/j.cell.2015.07.038
  • 10.1016/j.cell.2015.07.053
  • 10.1091/mbc.e06-04-0322
  • 10.1186/1471-2199-13-9
  • 10.1128/mcb.01557-06
  • 10.1089/scd.2008.0335
  • 10.1186/1471-2164-4-1
  • 10.1210/jcem.85.8.6852
  • 10.1084/jem.185.8.1467
  • 10.1242/dev.125.1.21
  • 10.1136/jmg.40.5.305
  • 10.1007/s00018-012-0935-3
  • 10.1093/emboj/cdg226
  • 10.1126/science.1260419